rs32860929 SNP Detail

Summary

• ID
  rs32860929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAG GCCATCTGCT AAAGGTGCTC
  Y
  GTTAGCTTCA CCCATTGTGA AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45704481	mCV23446160	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss321366746	CHEV_4_137274392	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32860929					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445788 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	1483 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1013 bp proximal
Rr100343	regulatory region 100343	812 bp proximal
Tssr39776	transcription start site region 39776	1122 bp downstream
Tssr39777	transcription start site region 39777	1096 bp downstream
Tssr39778	transcription start site region 39778	737 bp upstream
Tssr39779	transcription start site region 39779	767 bp upstream
Tssr39780	transcription start site region 39780	1043 bp upstream
Tssr39781	transcription start site region 39781	1208 bp upstream