rs32862253 SNP Detail

Summary

• ID
  rs32862253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165588037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCAAGGCGA CCGCAGGCGG CGGGCTGTGA GCCAGCCCTA GCGTTGGCGA GACACCCACC
  CTGCGCACGG AACGTGGGCA AGCCCAGACA GCACCACTCG GAGACACAAG CCTGGCTCCA
  GGGCAGTCTG GGTCCTGACA GCAGAGGAAG GGGCCTGGGG TGGCACAGTG CCAAGCCATC
  ACCCTCCCTC TGCCCCCAAA CCTTTCTCCA GGTGGCATCT GAGGGAGGAA GAACCGAGTT
  TACAGGATAG GTGTGGCCAG AGAGGCCCAT TGGACGGACA GTCTAACCAA TCCCGAAAGC
  R
  GAGGCTTTCC CTGTGGCCAG GCTATCCCTG TTGACCCATC TCTCAGAAGT GGATACTGTG
  GCTCTTCAGG TCAGGATGGG GGGCATGACG TTAAGTGAGC CACCCCCAAG TCACCTTCAG
  AAAATACAGG CAGAGTCCCA GTATGTACCC AGGTCCTCCG TGTGGGTGCT TCAAACTACT
  GGGTCTCACT TCCTCCCTAA GGCACAAAAG AGGCACCTCC TGCCCTTATG GTTGGGAGAT
  TTTTAATTAG AGGTAGGGGC AGGGTCTCAT GTAGCCCAGG CTGGCTTAGA ACTCACTAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45204048	mCV22645781	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148243816	ENSMUSSNP6364375	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32862253					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165588037 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569993	regulatory region 569993			within coordinates
Rr569994	regulatory region 569994			1958 bp proximal