rs32867179 SNP Detail

Summary

• ID
  rs32867179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74540845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT TCATCTCCAC TAGTAACTTA
  S
  AGCTCCAACA TCTAATGCGG ATACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45205713	mCV23154639	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss146763753	ENSMUSSNP2291503	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320348121	CHEV_2_74548558	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32867179					SNP	C	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74540845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11801	CpG island 11801	1238 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Hoxd3	homeobox D3	1492 bp upstream
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559370	regulatory region 559370	1363 bp distal
Rr559371	regulatory region 559371	300 bp distal
Rr559372	regulatory region 559372	936 bp proximal
Rr559373	regulatory region 559373	1437 bp proximal
Rr559374	regulatory region 559374	1561 bp proximal
Tssr18431	transcription start site region 18431	787 bp downstream
Tssr18432	transcription start site region 18432	1357 bp upstream
Tssr18433	transcription start site region 18433	1387 bp upstream
Tssr18434	transcription start site region 18434	1410 bp upstream
Tssr18435	transcription start site region 18435	1457 bp upstream
Tssr18436	transcription start site region 18436	1620 bp upstream