rs32867554 SNP Detail

Summary

• ID
  rs32867554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72020460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT CCTTCCATCT CCCAGGTCTC
  Y
  GTGTCCCGCT GCAATCTCCA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46202274	mCV24076212	ABI	CRAMUS_MOUSE	f	SNP		C	T						C
ss60631064	NES16276662	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	C	C	C	C	C		T	T	T	T
ss145150794	ENSMUSSNP6329822	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss322704854	CHEV_8_74091715	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32867554					SNP	T	C	T	T	C	T	C	C	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631064	NES16276662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72020460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	1543 bp proximal
Nxnl1	nucleoredoxin-like 1	1215 bp upstream
Rr665115	regulatory region 665115	576 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	1066 bp upstream
Tssr77870	transcription start site region 77870	1050 bp upstream
Tssr77871	transcription start site region 77871	1141 bp upstream
Tssr77872	transcription start site region 77872	1841 bp upstream
Tssr81733	transcription start site region 81733	1204 bp upstream
Tssr81734	transcription start site region 81734	1190 bp upstream
Tssr81735	transcription start site region 81735	1184 bp upstream
Tssr81736	transcription start site region 81736	1176 bp upstream
Tssr81737	transcription start site region 81737	1164 bp upstream
Tssr81738	transcription start site region 81738	1647 bp downstream