rs32870415 SNP Detail

Summary

• ID
  rs32870415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82070876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAACCCTGCG GGACATTCAG TCACGCTGGT CTAAATGATG TAGAATGTCT TCTTTGTTCA
  TCTTACTTTA TGTTTTTCTT TCTCCTGATT CTGGCTTCCT TGCTCTTTCT AAAATGACAT
  TTGAGGTCAT TATGTGGGTA TTACATTTTG CTTACATTTC CCTTCAGTCT GAAAGAAGTT
  ATTTATAAAG GTGTAGCTCT ATAAAATACA TGAAAGAGCA GAAGACAGGG ATGAGTTCAT
  CTCTCCTATG ATGGGCACTA GGTGGCCCCT TTTATAGGTG TACATCTACA TTTAGAGGAC
  Y
  TTGTTCGCAC AGAAATTTTC TTAGTGAGTT CTGGAATCAG AATGTTATCA ATCTGACTTG
  GTTCAGAGAC TCAGCAAGAG AGTGGCTGCC TGATGCTGTG TTAAAGGTAG AGTTAGGAGA
  GGTTTGGACA AGTGGGTACT GTCAGCTTAC TCGGTGTGGG AGGAAATACA TTAGCTCATG
  TTCTTTGGGA TATACTCCAG GGAAACATTG ACATGAAATC ACAGTAATTG ATCAGTGCCT
  CTGGGCTCAG CACATGGGCC TTAAACTCAA ACCTGTAGGA GTTACACTAA GTTAAAATGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46203057	mCV23366616	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32870415					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82070876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	1214 bp distal
Gm51582	predicted gene, 51582	1584 bp upstream
Inpp4b	inositol polyphosphate-4-phosphatase, type II	within coordinates
Rr666048	regulatory region 666048	1675 bp distal
Rr666049	regulatory region 666049	294 bp distal
Tssr78167	transcription start site region 78167	1737 bp downstream
Tssr78168	transcription start site region 78168	1702 bp downstream
Tssr78169	transcription start site region 78169	1672 bp downstream
Tssr78170	transcription start site region 78170	1630 bp downstream
Tssr78171	transcription start site region 78171	1529 bp downstream