rs32871799 SNP Detail

Summary

• ID
  rs32871799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26014774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGCCCAG CAAAAACACT TTTTTAAAAT GAGTGTTAGA
  TTTCAAACCT GGGACAAACG GCTGAAGTGA CTATTTAATA TATCAGAGTG AACCTGGCTT
  Y
  CAGCTTCCCC CAGCATCTGT CAGTCTTGGA ATGTCCAGGA CTAGGATAAG ACATGTTTCC
  TTCAAGGCCT GTGCTTCCTC CACCCATGAT GTTACTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45206193	mCV25059834	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146382781	ENSMUSSNP524394	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32871799					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26014774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11338	CpG island 11338	1324 bp distal
Gm54107	predicted gene, 54107	1405 bp downstream
Nacc2	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	1951 bp upstream
Rr56450	regulatory region 56450	1173 bp distal
Tssr23074	transcription start site region 23074	1997 bp upstream
Tssr23075	transcription start site region 23075	1924 bp upstream