rs32873353 SNP Detail

Summary

• ID
  rs32873353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70940877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT CTCCCTCCAT TTCAGTGCGG
  R
  AAAACAGACC TGAGGGAACC CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46203820	mCV22781954	ABI	CRAMUS_MOUSE	f	SNP		G						A		G
ss60632853	NES16283363	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	G		A	G	G	G		A	A	G	A		G
ss145126566	ENSMUSSNP2814837	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss322700312	CHEV_8_73012126	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32873353					SNP	G	G	A	G	G	A	G	A	A	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632853	NES16283363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70940877 () rs orientation: forward

Symbol	Name	Function Class
1700020G03Rik	RIKEN cDNA 1700020G03 gene	within coordinates
Cpgi20459	CpG island 20459	733 bp distal
Cpgi20460	CpG island 20460	within coordinates
Cpgi20461	CpG island 20461	1060 bp proximal
Gm63942	predicted gene, 63942	1222 bp upstream
Gm64830	predicted gene, 64830	within coordinates
Gm64831	predicted gene, 64831	within coordinates
Rr186749	regulatory region 186749	within coordinates
Tmem59l	transmembrane protein 59-like	869 bp upstream
Tssr81617	transcription start site region 81617	1002 bp upstream
Tssr81618	transcription start site region 81618	846 bp upstream
Tssr81619	transcription start site region 81619	101 bp upstream
Tssr81620	transcription start site region 81620	249 bp downstream
Tssr81621	transcription start site region 81621	284 bp downstream