rs32877045 SNP Detail

Summary

• ID
  rs32877045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185868481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGATTTAT GGGTATTTTA
  AATAAAATTT ACTGTGCAGT AGATTTATAA CTGGACCAGC AAGATAGATG AGCAGTTACT
  AAGAGTAAGG AAGACAATTA CTGAAATGGT TACTTCATGG AGGAAATATG ACAGACTTTA
  TGATGTTTTT TTTTCCTAAA ATATTTCCTT TATTTTCATA GAACTAGAAT GTGCCAGTTT
  Y
  GTTCACGGAC CTAGGGACTA GATCTCTGAA AGCCAAGTGT CAGCTGGGCC CTCTTGGCCC
  CTAAGACCAA ATGTACAAAT CTATACTTGC TCTTTACAAA GGCCATGATG CTACAGGGAT
  TCTACACCGT GGCAGTGGCT GCATCTGTAC TCACATCATG TTCTCCTCTG TATCTCGGGT
  TACCCCCGTG TCCCTATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss46740967	NES10650008	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs32877045					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740967	NES10650008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185868481 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	469 bp proximal
Rr425454	regulatory region 425454	1560 bp proximal
Tssr10623	transcription start site region 10623	1655 bp upstream