rs32877048 SNP Detail

Summary

• ID
  rs32877048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185868609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGACTT TATGATGTTT
  TTTTTTCCTA AAATATTTCC TTTATTTTCA TAGAACTAGA ATGTGCCAGT TTTGTTCACG
  GACCTAGGGA CTAGATCTCT GAAAGCCAAG TGTCAGCTGG GCCCTCTTGG CCCCTAAGAC
  CAAATGTACA AATCTATACT TGCTCTTTAC AAAGGCCATG ATGCTACAGG GATTCTACAC
  Y
  GTGGCAGTGG CTGCATCTGT ACTCACATCA TGTTCTCCTC TGTATCTCGG GTTACCCCCG
  TGTCCCTATG CCCAATCCTT CGCTTTCCTT TTAAAAGGAC TCCATTCATC TGATGTAGTG
  CCTCCTCTAA ATCCTAGATC ATTTCCACTT GAGATTCCCA ATCTGCTTCC ATCAGCAAAG
  ACACTGAATC TAATCAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ
ss46740970	NES10650010	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ
rs32877048					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740970	NES10650010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185868609 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	341 bp proximal
Rr425454	regulatory region 425454	1432 bp proximal
Tssr10623	transcription start site region 10623	1527 bp upstream