rs32877079 SNP Detail

Summary

• ID
  rs32877079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181240892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGGACCGC AGCTCGGTGA ACATGGAGCC CGCGGATGTG
  CGGCTCGGGC ACACGCCCCT CGCGGAGCAC CAGGCAGCCA GTGTGGCCGG TGGGCAACGC
  R
  CACCGCGTTC CCACCCGCCG CAGCCGGCCA AGCCCAAGCC GGTCCCCGCG GCCGGGGAGT
  CTGCGCGGCA AAGCACCTGC CGCCCAGCCC TGGGCGCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45206268	mCV23780818	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32877079					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181240892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12932	CpG island 12932	within coordinates
Cpgi12933	CpG island 12933	1776 bp proximal
Rr573053	regulatory region 573053	1600 bp distal
Rr573054	regulatory region 573054	within coordinates
Rr573055	regulatory region 573055	103 bp proximal
Rr573056	regulatory region 573056	1727 bp proximal
Samd10	sterile alpha motif domain containing 10	mRNA-UTR
Tssr28219	transcription start site region 28219	1490 bp upstream
Tssr28220	transcription start site region 28220	119 bp upstream
Tssr28221	transcription start site region 28221	57 bp upstream
Tssr28222	transcription start site region 28222	29 bp downstream
Tssr28223	transcription start site region 28223	144 bp downstream
Tssr28224	transcription start site region 28224	167 bp downstream