rs32877798 SNP Detail

Summary

• ID
  rs32877798
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87997333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCAACAT CGCCTCTGAA
  CTGGCCAAAT ATGGCCTCCA GTTACCGGCC TTCAGCAAGA TCGGGGGCAT CCTGGCCAAT
  GAGTTTTCAG CCGATGAGGC TGCAGGTAGG GCTGGACTCT GCCCCTGGGT AGGATGTGGG
  AGCATGGGGC AGCATGGAGG GGAGGGGGCG CCACTGCAAG CTTCATAGCC CTTGGGAGGG
  M
  TCTGGCACCT CATCCACAGG CAAGGGGGTC AAGCTCCCTG GTGCTTCGGC CAACTGTGCT
  CTGGTCTGGG TCCCTTCTGG CTTCTTGACC TTGCTGTGTT ACCCCTCCAA GTCCATGCAG
  CTATTCTGGC CATCAATGAT GCCGTGGAGC GAGGGGTGGT AGAGGACACT CTGGTCACCT
  TGCAGAATCC CAATGCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss46741250	NES10740552	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs32877798					SNP	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741250	NES10740552	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87997333 () rs orientation: forward

Symbol	Name	Function Class
D3Mit210	DNA segment, Chr 3, Massachusetts Institute of Technology 210	858 bp distal
Iqgap3	IQ motif containing GTPase activating protein 3	within coordinates
Rr68755	regulatory region 68755	1933 bp distal
Rr81852	regulatory region 81852	133 bp distal