rs32877802 SNP Detail

Summary

• ID
  rs32877802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87997823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGAGA AACCTTGGGT
  TATAGGGGCC AGGAAGTTGA GAGGCCTAGG GAGTCTCAAG CGGGAACTAG GACTGTGCTT
  TGTCCTGCCT CGGGGGACCG TTGAGAAGGA GCAGAGGAGC TGGAGGGTGA TCTCTGTGAG
  GGAGCAGGCT GGAGGGATGA GCCTCAGGCA GCTGAAGTGG GTCTGGAAGG AAACATGAGC
  Y
  CTGAGGCCAG ACTGCAGAGT CTACAGGCCG ACTGGCTTAA TTGTTGGTGT CTGGGGGTAG
  ACCCCACGTT CTCCTCAGTC CTCAGCAGGC TGGTCTTGGC CTGGCTGGCT GTCAGTCTGC
  AGAAATGACA AGGATAGGGA GGAAGAGATT GTGCTGTCAC CCCCCCACCC CACCCCCGCA
  CCTCCCCATC TCAAGTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46741256	NES10740556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32877802					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741256	NES10740556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87997823 () rs orientation: forward

Symbol	Name	Function Class
D3Mit210	DNA segment, Chr 3, Massachusetts Institute of Technology 210	1348 bp distal
Iqgap3	IQ motif containing GTPase activating protein 3	within coordinates
Rr81852	regulatory region 81852	623 bp distal