rs32877841 SNP Detail

Summary

• ID
  rs32877841
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185870857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTATCG AGTTGGGGGG
  AGGAGACTTG GTTAAAGCTT GCCTCATGGA TTTAGTGAGG CTCTAGATGG TCTCTGGGAA
  TAGTGAGGGA TTTTATAACT TGAGTTTGTT CACCAGATCT CGGACTAGGA TCTGCCTTGA
  TTTCTTTCTT TTTGCCCAGT TCCACACTCT CTCCACATGT CTTACAGACC AACGCCACCC
  K
  TCAGGGATTA GCCTGGGGTG TAGCATGAAA TGGGCCTTCA GGAAGTGCTT GCAGAAGATG
  TGAAGTGTCT GGTCCACACC AGTAACATGA GTAAAACTCC TTTCTCAACT GCTCCATTCT
  CTTGGTTGCA TAGATAGGTC ATCCTCAAGT CTTACTGAGA CCAAGACAAT TGTAAAACAC
  AAATGGCATG TCCCATGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46740988	NES10649891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32877841					SNP	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46740988	NES10649891	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185870857 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	1324 bp distal
Rr425454	regulatory region 425454	295 bp distal
Tssr10623	transcription start site region 10623	689 bp downstream