rs32878016 SNP Detail

Summary

• ID
  rs32878016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164326019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA ACAAATTTTA GAAATTGATG
  Y
  TCTTCCCAGC TGCCTGCATC CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45206649	mCV24934605	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148225414	ENSMUSSNP3305999	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320606015	CHEV_2_164309599	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32878016					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164326019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	1648 bp proximal
Gm10725	predicted gene 10725	1432 bp downstream
Gm20458	predicted gene 20458	within coordinates
Tssr21598	transcription start site region 21598	1968 bp upstream