rs32878425 SNP Detail

Summary

• ID
  rs32878425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147019964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATTCTTTC TTTGGCATTG TGGTCCTACT GTAAATGGAC TTTACCCAGA CATCCCTCAA
  ATCCACAGAT GACCAGATTG TGCTCCCAGG CCTGAGTCAG TCGCCCGACC TGAAATTGTT
  TTCTTATCCA ATCGCTCCAC CTTGCGGACA CTATGGGCAC CGCAGCTTCG ATCCTGGCAT
  CCATCCGTCG GTTTTGAAAT GCTGGTTTAA GAAAGTAAAA AGATCAGTGT CTGGAGCGCC
  AAGGTGGACT GATTTCATGC TTGTTTGTTT TGTTTGGGTG TTTGAGGGGA GTTCAGGGGG
  S
  TTTAATGATT GAGGAGATGC TGAGGAAGAT AATCTTCTGG GCTCCCAGTC TACTGCGATG
  CCCTCCAACT TCTTGGAAAG GCTGTGGGCA GAGATGGAAG GCATCCCGAC TCGTGTATCT
  CTTTCATTTT GGATGCCCCA CCCCACACCG CTGCCTCTGT GTAGTTTAGG AATTGGCACC
  GAGTTGGCAT ACTTTTATAG GATGGGGTGT TTCAGCCTCC CATTAACCGC CCCCAAGCGT
  CCACGCGGCG TGTCCCCCTG GTGGTAAAAT CCCGCTACTG TATAGCATGC AGTGTCAAGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45207318	mCV22637857	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs32878425					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147019964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	249 bp proximal
Cpgi12377	CpG island 12377	598 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates