rs32878664 SNP Detail

Summary

• ID
  rs32878664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCCTG TCTCGAAAAA
  ACAAAAACAA AAAAACCCAT AACTTCTCTT TTTGGGCGGG AGAAGCCAGA GACAGCCCTC
  TTGGTTTGCT CACAGCATCC ATGGAGGGAG AGCTTCTGAG AGAGTCTAAG AACACAGTTG
  GAAAGCAACA TACTGAGAGG ACTTGAGTCT CTCCTCACAA CTGTATTCCT GGATGCAGCT
  K
  AAGAAGGAGT GGGTCTTAGT GAAGAAAGAC AAGAATTCTC TTTCATCTCT GAAACTTTAC
  CATGAGGTGT TACCACGAGT CAGCTCTCTA AGAAAGAACC CTGTAGTAGT ATGAACCACC
  TGGAATTCCC CTTCTGTGAG CTAGACCCGG GGAACTGGAA GTCACTTTTC TGGCTGGAGA
  TTGACGCTGG TTAATGTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47725980	NES11329127	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32878664					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47725980	NES11329127	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200385 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1157 bp upstream
Cpgi21943	CpG island 21943	892 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	876 bp upstream
Tssr85679	transcription start site region 85679	1054 bp upstream
Tssr85680	transcription start site region 85680	1076 bp upstream
Tssr85681	transcription start site region 85681	1172 bp upstream
Tssr85682	transcription start site region 85682	1267 bp upstream
Tssr85683	transcription start site region 85683	1292 bp upstream
Tssr85684	transcription start site region 85684	1324 bp upstream
Tssr85685	transcription start site region 85685	1337 bp upstream
Tssr85686	transcription start site region 85686	1454 bp upstream