rs32878666 SNP Detail

Summary

• ID
  rs32878666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTGGTT TGCTCACAGC
  ATCCATGGAG GGAGAGCTTC TGAGAGAGTC TAAGAACACA GTTGGAAAGC AACATACTGA
  GAGGACTTGA GTCTCTCCTC ACAACTGTAT TCCTGGATGC AGCTGAAGAA GGAGTGGGTC
  TTAGTGAAGA AAGACAAGAA TTCTCTTTCA TCTCTGAAAC TTTACCATGA GGTGTTACCA
  S
  GAGTCAGCTC TCTAAGAAAG AACCCTGTAG TAGTATGAAC CACCTGGAAT TCCCCTTCTG
  TGAGCTAGAC CCGGGGAACT GGAAGTCACT TTTCTGGCTG GAGATTGACG CTGGTTAATG
  TAAGTGAACT GGTGTTGATC CTGGCTTAAT TCTCTTTCCT CACAGTTTCT GTCTAAAGGT
  TCCAGCAGGG TGTGGTACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47725982	NES11329128	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32878666					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47725982	NES11329128	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200461 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1081 bp upstream
Cpgi21943	CpG island 21943	816 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	800 bp upstream
Tssr85679	transcription start site region 85679	978 bp upstream
Tssr85680	transcription start site region 85680	1000 bp upstream
Tssr85681	transcription start site region 85681	1096 bp upstream
Tssr85682	transcription start site region 85682	1191 bp upstream
Tssr85683	transcription start site region 85683	1216 bp upstream
Tssr85684	transcription start site region 85684	1248 bp upstream
Tssr85685	transcription start site region 85685	1261 bp upstream
Tssr85686	transcription start site region 85686	1378 bp upstream