rs32879227 SNP Detail

Summary

• ID
  rs32879227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152650862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGGCTT TTCCACTGTG
  TACAAGTTCC TCAAAATAAT GATTCTGAGA CTTGCTATTT CATGAAGAAA CGCTTAGGCC
  AATAGCTTAG GCTTGTTCCC TGGCTGAGTT GTAACTTACT TATCCATTCA TTCTAATCTA
  CGTCCCACCA TGTGGCTGGT TACCTCTCCT CAGCTTCATA TGACCGTCTA TCTCCATCAG
  Y
  ATTTGGGGAG AATCTCCCCA CTTATTCTAT TCTGAGGGCC AAATGACTGG TTACCTTCTT
  CTCAGTTTAC TCATCCCTGA CTCTTTCCCA GAATTCTTCT TTCTCTCTGC TGGTACTCCC
  ACCTCCTATT TCCTGCCTCA GCTCATTGGT CACAGGCGAT TTTTTACTGA CAGGTAATGC
  TTCCATACAG TTCCCAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45206865	mCV27575688	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss147974817	ENSMUSSNP460810	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32879227					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152650862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A630035D09Rik	RIKEN cDNA A630035D09 gene			within coordinates
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr374093	regulatory region 374093			within coordinates
Rr567478	regulatory region 567478			201 bp distal
Rr567479	regulatory region 567479			1209 bp proximal
Tssr20835	transcription start site region 20835			1526 bp upstream