rs32879227 SNP Detail

Summary

• ID
  rs32879227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152650862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGGCTT TTCCACTGTG
  TACAAGTTCC TCAAAATAAT GATTCTGAGA CTTGCTATTT CATGAAGAAA CGCTTAGGCC
  AATAGCTTAG GCTTGTTCCC TGGCTGAGTT GTAACTTACT TATCCATTCA TTCTAATCTA
  CGTCCCACCA TGTGGCTGGT TACCTCTCCT CAGCTTCATA TGACCGTCTA TCTCCATCAG
  Y
  ATTTGGGGAG AATCTCCCCA CTTATTCTAT TCTGAGGGCC AAATGACTGG TTACCTTCTT
  CTCAGTTTAC TCATCCCTGA CTCTTTCCCA GAATTCTTCT TTCTCTCTGC TGGTACTCCC
  ACCTCCTATT TCCTGCCTCA GCTCATTGGT CACAGGCGAT TTTTTACTGA CAGGTAATGC
  TTCCATACAG TTCCCAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45206865	mCV27575688	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss147974817	ENSMUSSNP460810	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32879227					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152650862 () rs orientation: forward

Symbol	Name	Function Class
A630035D09Rik	RIKEN cDNA A630035D09 gene	within coordinates
Bcl2l1	BCL2-like 1	within coordinates
Rr374093	regulatory region 374093	within coordinates
Rr567478	regulatory region 567478	201 bp distal
Rr567479	regulatory region 567479	1209 bp proximal
Tssr20835	transcription start site region 20835	1526 bp upstream