rs32879367 SNP Detail

Summary

• ID
  rs32879367
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121994386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTAGGAAA AATCTTTACA GAATACAGTA AAGGCCAAGC
  AAAATGTGTG AGGGACGAGG AATGCAAACC TTGCAGAAAG AGAGTTTCCA GGAAGTGCTC
  S
  TTACACCAGG CAGCAGAGCA GCTGTTTCCC TAGAGCAGGC AGTCACAAGG ATCTAAGATG
  TAGGACAGCA GACTCCACCT GGGGGAGGTG GAGTGGAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45207232	mCV24435074	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss320487289	CHEV_2_121989641	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs32879367					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121994386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			1278 bp downstream
Rr563920	regulatory region 563920			1994 bp distal
Rr563921	regulatory region 563921			within coordinates
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant