rs32879438 SNP Detail

Summary

• ID
  rs32879438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGCACAGG CATCAGATGT TCAGAGCCAT TTTCAGCTAC
  AGAACAAGTT CCAGGCCACC TAGCAATTTG GCGGCTAGAG TTGATGATAT ATATATAATT
  R
  CTCTGGCATA AATTCCAAAC CAAACCCAAA TAAAACCCAT ATGGTGTTAG AGGCAGTACT
  CTTAAATTCG AGGTCAGCCT GGTCTACAGA GGGAGTTCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47725994	NES11329139	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32879438					SNP	A	A	A	A	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47725994	NES11329139	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200785 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	757 bp upstream
Cpgi21943	CpG island 21943	492 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	476 bp upstream
Tssr85679	transcription start site region 85679	654 bp upstream
Tssr85680	transcription start site region 85680	676 bp upstream
Tssr85681	transcription start site region 85681	772 bp upstream
Tssr85682	transcription start site region 85682	867 bp upstream
Tssr85683	transcription start site region 85683	892 bp upstream
Tssr85684	transcription start site region 85684	924 bp upstream
Tssr85685	transcription start site region 85685	937 bp upstream
Tssr85686	transcription start site region 85686	1054 bp upstream