rs32879675 SNP Detail

Summary

• ID
  rs32879675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185871729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGTTCTGT TTTGGTAATG CTCGCATAAC CTAATCCAGC
  ATTTAGATGT ATAAGAAATT TCCAGTTCTG ACACTCCAGT CACCCACAGT GAAGAAGAGC
  R
  CAACTGGCAT TTCTCACAAA CTGTAATCTT TCTCTGAGGC TTACATGAAA CTCTCATTTT
  TTTCCTCATG AATCTTCAAA TTCAAATCCC AGGATACTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46741006	NES10649905	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G		A		A	G		A
ss146452437	ENSMUSSNP6103226	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss320182241	CHEV_1_187963411	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32879675					SNP	G	A	A	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741006	NES10649905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185871729 () rs orientation: forward

Symbol	Name	Function Class
Rr425454	regulatory region 425454	1167 bp distal
Tssr10623	transcription start site region 10623	1561 bp downstream