rs32880283 SNP Detail

Summary

• ID
  rs32880283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155869252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TTCCTTCCAT GCCCCTTACC
  Y
  GTTGACAGCT GATATGGCTC CATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45707401	mCV24976109	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss321442828	CHEV_4_155158904	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32880283					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155869252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	43 bp distal
Rr606569	regulatory region 606569	629 bp distal
Rr606570	regulatory region 606570	129 bp distal
Rr606571	regulatory region 606571	1187 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	765 bp upstream
Tssr44972	transcription start site region 44972	103 bp downstream
Tssr44973	transcription start site region 44973	141 bp downstream
Tssr44974	transcription start site region 44974	213 bp downstream
Tssr44975	transcription start site region 44975	227 bp downstream
Tssr44976	transcription start site region 44976	254 bp downstream
Tssr44977	transcription start site region 44977	264 bp downstream
Tssr44978	transcription start site region 44978	1069 bp downstream
Tssr44979	transcription start site region 44979	1088 bp downstream