rs32880378 SNP Detail

Summary

• ID
  rs32880378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144110626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAAATTAT AGGAGCCAAC AGTGCACAGG CTTTCTACGT
  AAGACACATA TGGTATGCAA TTCTACCCTA AAGTCATCTT AAGGAGAGAA CACCTTGGGG
  K
  AAAAGACTTT ATAGTAATTA AAATGTCTGG ATATCAGACT TCTCCTTTCA GGCCTCCTTA
  CCTTGCCAAG GAACTTTACT AGCATTCAAA CTCCTCAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45207247	mCV22515789	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	G
ss147789027	ENSMUSSNP6563315	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32880378					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144110626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1410 bp proximal
Rr566423	regulatory region 566423	515 bp distal
Rr566424	regulatory region 566424	244 bp proximal
Rr566425	regulatory region 566425	1108 bp proximal
Rr566426	regulatory region 566426	1856 bp proximal
Snx5	sorting nexin 5	Intron
Tssr20524	transcription start site region 20524	1868 bp upstream
Tssr20525	transcription start site region 20525	1916 bp upstream
Tssr26594	transcription start site region 26594	1360 bp downstream
Tssr26595	transcription start site region 26595	1734 bp downstream
Tssr26596	transcription start site region 26596	1798 bp downstream