rs32880884 SNP Detail

Summary

• ID
  rs32880884
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65203013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC AAAGAATTCT AGCTTCAGCC
  S
  GGAGGTTATA GCACATGACT TTAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47726014	NES11329061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32880884					SNP	C	C	C	C	C	C	C	C	G	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47726014	NES11329061	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65203013 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	within coordinates
Cpgi21943	CpG island 21943	673 bp distal
Gm16218	predicted gene 16218	1801 bp downstream
Rr201317	regulatory region 201317	1788 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	1451 bp downstream
Tssr85679	transcription start site region 85679	1562 bp downstream
Tssr85680	transcription start site region 85680	1527 bp downstream
Tssr85681	transcription start site region 85681	1390 bp downstream
Tssr85682	transcription start site region 85682	1356 bp downstream
Tssr85683	transcription start site region 85683	1314 bp downstream
Tssr85684	transcription start site region 85684	1294 bp downstream
Tssr85685	transcription start site region 85685	1287 bp downstream
Tssr85686	transcription start site region 85686	1155 bp downstream