rs32880888 SNP Detail

Summary

• ID
  rs32880888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65203177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA ATGGACTTGA CAAATGGGTT
  R
  GAAAGATAGC TCAGCAAATA AAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47726018	NES11329065	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32880888					SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47726018	NES11329065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65203177 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	within coordinates
Cpgi21943	CpG island 21943	837 bp distal
Gm16218	predicted gene 16218	1637 bp downstream
Rr201317	regulatory region 201317	1624 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	1615 bp downstream
Tssr85679	transcription start site region 85679	1726 bp downstream
Tssr85680	transcription start site region 85680	1691 bp downstream
Tssr85681	transcription start site region 85681	1554 bp downstream
Tssr85682	transcription start site region 85682	1520 bp downstream
Tssr85683	transcription start site region 85683	1478 bp downstream
Tssr85684	transcription start site region 85684	1458 bp downstream
Tssr85685	transcription start site region 85685	1451 bp downstream
Tssr85686	transcription start site region 85686	1319 bp downstream