rs32884037 SNP Detail

Summary

• ID
  rs32884037
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88204808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCCA AGCTGGCCAG
  TGTTGCCCAG CTCCGTCCCG CCATGACTCG GCCCTCGTGC CTTCCAGTGG TCTTTTCGCC
  TTGGACCAAG CTCCTTCCCC ACTTTTCTTC TCTTGCCTCT CCTGTCGCCT TCTTTTGACA
  AAATGACTTT CCGCTCTCGG AGTCGCTAGT CTTTACGTGT GCTTCATCCT ATTCGCGTTC
  S
  GTTCTTTAGT CGCCACCCTC CACGCCCCCG TGTCCTTTAC AGCATGATTT CCGTGTAGAT
  AGTAATGATG GTTCTTAACG GTAGGCCTTG CTTCCTATGC TCGGTCCATC CCTCCGTAGA
  GGCGTGACTT AACGGCAACT CGCTTGATTG ATACTTTAGC ATCAGTATTT AGGAGGCTGT
  AGTAGAGTTG TTAAGTTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46742435	NES10758341	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32884037					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742435	NES10758341	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88204808 () rs orientation: forward

Symbol	Name	Function Class
Cct3	chaperonin containing TCP1 subunit 3	within coordinates
Cpgi13369	CpG island 13369	within coordinates
Gm65645	predicted gene, 65645	733 bp downstream
Rr579705	regulatory region 579705	857 bp distal
Rr579706	regulatory region 579706	674 bp distal
Rr579707	regulatory region 579707	303 bp distal
Rr579708	regulatory region 579708	625 bp distal
Rr579709	regulatory region 579709	within coordinates
Rr579710	regulatory region 579710	126 bp distal
Rr579711	regulatory region 579711	58 bp distal
Tsacc	TSSK6 activating co-chaperone	502 bp upstream
Tssr29933	transcription start site region 29933	829 bp downstream
Tssr29934	transcription start site region 29934	509 bp downstream
Tssr29935	transcription start site region 29935	357 bp downstream
Tssr29936	transcription start site region 29936	308 bp downstream
Tssr29937	transcription start site region 29937	283 bp downstream
Tssr33996	transcription start site region 33996	1091 bp upstream
Tssr33997	transcription start site region 33997	891 bp upstream
Tssr33998	transcription start site region 33998	592 bp upstream
Tssr33999	transcription start site region 33999	562 bp upstream
Tssr34000	transcription start site region 34000	513 bp upstream