rs32884772 SNP Detail

Summary

• ID
  rs32884772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152731113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCCCTG ACCCTGTCCA
  TCCACTTGCC TCTCTGGTCC ATGGCAGGGG GATGGGGAGG GGGAGGGGAA GGTGCAGCTG
  CCAGGGCGCC CTTCCTGAGC TTAGCCCAGA CTTAGCTGGC AGGGAGATGG GAGTGTGTGG
  GGAGAGGTGG GTATCCCTGA AGCACAGACA GCATTGCCAG GAGGAACAGC TTTCCAGTGT
  Y
  CGCCACAGGG AGGAAGTAAG CAGAAAGCTG GGGGCATGAT GGGGCTGCCT TGTTCTCACC
  CTGCCATGTC AATCTCTGAG GGCCGTACCA GTGTCTATTC ATGGCTTATA GCACCGGTGT
  GAGCCCCTAG ACCCCAGGCT CTCAATACTA GGTTGCTCCC GGAATCTGTT TGGCACAGGT
  CTGTCTTGCT TACTCTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46742550	NES11009132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32884772					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742550	NES11009132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152731113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	312 bp proximal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	888 bp proximal
Rr93365	regulatory region 93365	88 bp proximal
Rr97434	regulatory region 97434	919 bp proximal