rs32885166 SNP Detail

Summary

• ID
  rs32885166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140427689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGCAAAG ACCCTAGAAA CTCTCTCTAG TCAACCAAGG
  AAGTTGCCAA AAAAGAAACT TTCAGTGTTA ACTCGGGCGC TCGAGAGAGA GAGAGAGAAG
  Y
  AGGAGGATCA GGTTCAATGT CAGCCTGGGC TACACGGTCA GTTTCAGGCC AGCCTGGGCT
  ACATGAGACG GAAACAAAAC CCCAAAGAAA AACATTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45707184	mCV23725064	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32885166					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140427689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	399 bp distal
Cpgi15195	CpG island 15195	687 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	within coordinates
Rcc2	regulator of chromosome condensation 2	163 bp upstream
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	495 bp distal
Rr603518	regulatory region 603518	within coordinates
Rr603519	regulatory region 603519	174 bp proximal
Rr603520	regulatory region 603520	882 bp proximal
Rr603521	regulatory region 603521	1032 bp proximal
Tssr39970	transcription start site region 39970	496 bp downstream
Tssr39971	transcription start site region 39971	423 bp downstream
Tssr39972	transcription start site region 39972	403 bp downstream
Tssr39973	transcription start site region 39973	380 bp downstream
Tssr39974	transcription start site region 39974	32 bp downstream
Tssr39975	transcription start site region 39975	93 bp upstream
Tssr39976	transcription start site region 39976	109 bp upstream
Tssr39977	transcription start site region 39977	224 bp upstream
Tssr39978	transcription start site region 39978	1048 bp upstream
Tssr39979	transcription start site region 39979	1069 bp upstream
Tssr39980	transcription start site region 39980	1088 bp upstream
Tssr39981	transcription start site region 39981	1132 bp upstream
Tssr39982	transcription start site region 39982	1144 bp upstream
Tssr39983	transcription start site region 39983	1230 bp upstream
Tssr39984	transcription start site region 39984	1455 bp upstream
Tssr39985	transcription start site region 39985	1517 bp upstream
Tssr39986	transcription start site region 39986	1558 bp upstream
Tssr39987	transcription start site region 39987	1703 bp upstream
Tssr39988	transcription start site region 39988	1799 bp upstream
Tssr39989	transcription start site region 39989	1838 bp upstream
Tssr44270	transcription start site region 44270	728 bp upstream
Tssr44271	transcription start site region 44271	695 bp upstream
Tssr44272	transcription start site region 44272	555 bp upstream
Tssr44273	transcription start site region 44273	691 bp downstream