rs32885325 SNP Detail

Summary

• ID
  rs32885325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85392453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGAAAGAGCT CGACTGAGCT GCGGAATAGC CTGAGTAGCA TCATTGGGAC CTCTGCGACT
  TGGAAGAAAC GACTATATCC TGGAGCTTTA GAGAGGTGGC AAGGCAGAGC CTGTGGCCAC
  GGTAAGGGGT TGTGGGAGCC AGCCCTTTAA AGAAGCTGTT CAACTTAGAA GTGTTGAAGT
  CTGGAGGAAT GTGCACGCTG GGGGAAGTTT GTACGTCTCT GGCCTTGATT CTTGACTCAG
  CACATGGCAT AGTGAAAGGC AATCCAGGCA AATTCAAGCC CCCTATTGGG GACCTGATGT
  W
  TCACAGAAAG GTGTTCACAG AGAGCATGTG GGAAACAGTA CAGGTGAAGT CCGAATAGGA
  TATATTGGGA GATTAGGGTA TCTTGTGAAG CTGGGTACAG GTGTGTTTGT TTCTGAGACA
  GGGTTTCACT GTAACCTGGC TGGACTGGAA TAAGAGATTC ACCTGCCTCT GCCTCTTCCG
  CGCTGGGATT AAATCATGCC ATACCACATT TAGCTTGTGT TAAGATCTCT AGACTCTTTT
  TTTTTTTTCT TTTTTGGTTT TTTGAGACAG GGTTTTTCTG TATCTGTATA GCCCTGGCTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46204959	mCV24192593	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs32885325					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85392453 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	798 bp upstream
Cpgi20703	CpG island 20703	1313 bp distal
Cpgi20704	CpG island 20704	253 bp distal
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368565	regulatory region 368565	1624 bp downstream
Rr368566	regulatory region 368566	666 bp downstream
Tssr2627	transcription start site region 2627	686 bp downstream
Tssr78425	transcription start site region 78425	1586 bp downstream
Tssr78426	transcription start site region 78426	1567 bp downstream
Tssr78427	transcription start site region 78427	1259 bp downstream
Tssr82110	transcription start site region 82110	1869 bp upstream