rs32885407 SNP Detail

Summary

• ID
  rs32885407
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACAGGG CCTTGGGGAA
  TAACTCATAG CTGCTGTGTT TGCTTGAAAG TCCGAAGCCG GGTCTCCTCT GGAGAGGGAG
  GCTGGGGCTG GAAGTTACAA CCCAGCTCGG AAGCAGAGCT GGTGGCAGAA AGACCACAGG
  TCAGAGATCC AGGTAACCTG AGCTAGAGTT CCGGTGAGCC ACTCACTAAT GCTGGCAGAC
  S
  GACCACTACA TTAGGGGCAT CAGGTCCCCC AACTGAGGTA TCAGATCCCC AGTAGATGTA
  TGCAGATTCT CTAGGTGTGG CGGTGGTAGG TGGATCACAT TCCACTGGGG TTTCTGTCAG
  GGGTGGGGCT ACAGCAGGCG TACCACTGCC TTGCAGTAGC ACTGGGCCCC CACCAGGGGC
  GCTGTGCCCC TATTTAGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46742556	NES11009115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32885407					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742556	NES11009115	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	401 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	94 bp distal
Rr97434	regulatory region 97434	within coordinates