rs32885409 SNP Detail

Summary

• ID
  rs32885409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88241078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGGGCTC TTCTCTGGAG
  TCTCGGGTTC CTTCATGTCC AGCAGGGCCA GTGTCTCCGG TTCTGTCATT GTGAGGCTTC
  AGTTCCGAGG GCTACCACAG AACGATGTCA TCCTATAGGC AGTGGGAGAA GTTCTGTGAG
  AATACCTAGT CTTCTGGCCC CAGGACAGTT TCTCAGACCT AGAACTCCCC AGAGAAGCTG
  R
  CCTCATGGGA CTCTAGGGAG AACACTGTGG GGAGGAAGGT GTTGAAACAG AGAGGCGGGC
  GGGCAGCAGA GGAGCGAAAT GGAGGATCCC TTTCAAAATA AATGTCATCC AGCAGGACAA
  GGGTGAGTCA GGGGGCACAA GCAGAGGCAG GTGTGGCCTG TCTATACCCA CACCTGCCTT
  CTACTCTCTC CACTAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss46742558	NES10756616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs32885409					SNP	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742558	NES10756616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88241078 () rs orientation: forward

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	968 bp downstream
Cpgi13370	CpG island 13370	363 bp distal
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	1095 bp proximal
Gm65350	predicted gene, 65350	within coordinates
Rr579717	regulatory region 579717	110 bp distal
Rr579718	regulatory region 579718	within coordinates
Rr579719	regulatory region 579719	487 bp proximal
Rr579720	regulatory region 579720	1999 bp proximal
Tmem79	transmembrane protein 79	within coordinates
Tssr34001	transcription start site region 34001	657 bp downstream
Tssr34002	transcription start site region 34002	711 bp downstream