rs32885410 SNP Detail

Summary

• ID
  rs32885410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTATGCA GATTCTCTAG
  GTGTGGCGGT GGTAGGTGGA TCACATTCCA CTGGGGTTTC TGTCAGGGGT GGGGCTACAG
  CAGGCGTACC ACTGCCTTGC AGTAGCACTG GGCCCCCACC AGGGGCGCTG TGCCCCTATT
  TAGTGTGTCA GATGCCAGGT AGCAGGACAG AGGGTAGGTG GCTTCCCCTC AGCAGTAGCG
  Y
  GCAGTCCTCC ATGTCACCAG CCAGCAGGGT CCTTGTAACA GTCTGCTCTT GTCTCCATAG
  CTTATCATGT CCAGAGTCGC CCACAGTTTG CTGCAGATCT GTTGCTCACT GTGCAGTTTG
  AATGAGATGT CTCCAGGTCT CTGGCATCGA GAACACAGTC CCCAGGGGTG GCAATGTTTG
  AGAGGTTTAA GAGGCATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46742559	NES11009116	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C		C	C	C		T
ss148084585	ENSMUSSNP1349051	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss321435524	CHEV_4_152022001	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32885410					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742559	NES11009116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	656 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	349 bp distal
Rr97434	regulatory region 97434	within coordinates