rs32885413 SNP Detail

Summary

• ID
  rs32885413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCTTGC AGTAGCACTG
  GGCCCCCACC AGGGGCGCTG TGCCCCTATT TAGTGTGTCA GATGCCAGGT AGCAGGACAG
  AGGGTAGGTG GCTTCCCCTC AGCAGTAGCG CGCAGTCCTC CATGTCACCA GCCAGCAGGG
  TCCTTGTAAC AGTCTGCTCT TGTCTCCATA GCTTATCATG TCCAGAGTCG CCCACAGTTT
  R
  CTGCAGATCT GTTGCTCACT GTGCAGTTTG AATGAGATGT CTCCAGGTCT CTGGCATCGA
  GAACACAGTC CCCAGGGGTG GCAATGTTTG AGAGGTTTAA GAGGCATGGC CTTGTTAGTG
  GAAGCACACC ACACTGGAGA AGATCTCTGT GAGTTCAAAC ACTCACAGCA TTTTGAGGTC
  ATTTCTCTGT GTTTCTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46742562	NES11009117	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G		A	G	G
ss148084589	ENSMUSSNP5440033	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
ss321435526	CHEV_4_152022091	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs32885413					SNP	A	G	G	G	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742562	NES11009117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	746 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	439 bp distal
Rr97434	regulatory region 97434	within coordinates