rs32886159 SNP Detail

Summary

• ID
  rs32886159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152733079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGT GGTGGGCCGT GTCAGCCCCC
  R
  AGTACAGGCG TTTTCCTTTG CTCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46742568	NES11009085	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G		G	G	A	G
ss148084634	ENSMUSSNP7168809	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321435537	CHEV_4_152022731	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32886159					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742568	NES11009085	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152733079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	1386 bp distal
Gm69406	predicted gene, 69406	within coordinates
Gm69411	predicted gene, 69411	1874 bp upstream
Rr87959	regulatory region 87959	479 bp distal
Rr93365	regulatory region 93365	1079 bp distal
Rr97434	regulatory region 97434	430 bp distal
Rr103964	regulatory region 103964	1923 bp proximal