rs32886270 SNP Detail

Summary

• ID
  rs32886270
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134100024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGGCTAG GAGGCAGGGT TTCCACTTAA CCCCTTGCAA
  CCTCTTTCGC TGGGGTACCG TTTCGTTTCT TTTTCCTTTT TTTTTTTTTT TGAGACGAGG
  K
  GGGTGGGGAT GTTCCTGTAG CCCCGGTTGG TTTCAAACCC ACCTTGCAAC CAAGGACTTT
  GAGTCCCTGA TCAATCTGTC TTCACCTCGG AGTGCTCGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45707778	mCV22573465	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss147527469	ENSMUSSNP6215252	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321347226	CHEV_4_133928628	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32886270					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134100024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	1178 bp distal
Extl1	exostosin-like glycosyltransferase 1	131 bp upstream
Rr601651	regulatory region 601651	1173 bp distal
Rr601652	regulatory region 601652	within coordinates
Rr601653	regulatory region 601653	1478 bp proximal
Tssr43895	transcription start site region 43895	1079 bp upstream
Tssr43896	transcription start site region 43896	152 bp upstream
Tssr43897	transcription start site region 43897	124 bp upstream