rs32887052 SNP Detail

Summary

• ID
  rs32887052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88359218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAAGGT CCCACAGGCA
  TAGAGGTGAG TAGCATTGTA AGAGACCAGG ACTCGAATGA AGTTGAAACA CTGTGTCTAT
  GGAGAAGCAA AGAAATCAGG CTATCAGGCC GATTGCCCGC CTCCTGGGGT CTTAGAGGAT
  GCTCCCCCAT CCCCAGTGGA GAGGAGGGTT GAGATCAAGA AACTTGACAG AACATGACCC
  R
  CTGGATAATC ACAGGAACAG GTCCTCCTGC CCCCACCCCT GTGGTCACCA GGGATGGTCT
  CTGACACCAG GGTTCTGTCG CCCACCCTCT GCCCCCACCT GCGTTTACCT CATTGCTCTT
  CTTCTTAAAG GCACATTCGG TCTTTTTTCT CTCACTGGCT GGCCAGGGTA TCTAAAGTGG
  AGAGTTGAAA GGGGTAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743242	NES10752240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32887052					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743242	NES10752240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88359218 () rs orientation: forward

Symbol	Name	Function Class
Rr367457	regulatory region 367457	1487 bp upstream
Rr579759	regulatory region 579759	734 bp distal
Rr579760	regulatory region 579760	402 bp proximal
Rr579761	regulatory region 579761	1441 bp proximal
Sema4a	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	within coordinates
Tssr34017	transcription start site region 34017	457 bp downstream
Tssr34018	transcription start site region 34018	1477 bp downstream
Tssr34019	transcription start site region 34019	1494 bp downstream
Tssr34020	transcription start site region 34020	1508 bp downstream
Tssr34021	transcription start site region 34021	1562 bp downstream