rs32887885 SNP Detail

Summary

• ID
  rs32887885
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88360466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCCTC ACCATGTTCT
  TTAGCCTTGG GATTCCTGGG TTCTGGATAT TCAAGGCCAG GACGGCCTCT CGAGCCCCCA
  CATAGAGAGT GTTGCCATCG TCACTCAGGA GCAGCGTGTC AAAGTCTCGG AGGCCTTTTT
  GTTGGAAGAA GCTGAGGGCC CTGTGCCCGT CTCCTGTTGG GAGGCAATGA CAAGGAGAGG
  M
  TGAGAAGGAG CTGACCACTG AGGCAAAGGT GGGGGAGGGG TGGCAGGCCT CAGCAGCTGC
  CCCCCTTCAC TGGCGGCACC CCCCTCCATT TCCTTCATCC TTCAACAGCA GGGCATCGGA
  ACTTTGTGGA TTGAGTCCCC AGAAGTGAAA AGTTCCAAAG ACAGGGTAAT GGTAGCTTGG
  GTACTGTTGG TGGTGTTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss46743245	NES10752241	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs32887885					SNP	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743245	NES10752241	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88360466 () rs orientation: forward

Symbol	Name	Function Class
Rr367457	regulatory region 367457	239 bp upstream
Rr579759	regulatory region 579759	1982 bp distal
Rr579760	regulatory region 579760	635 bp distal
Rr579761	regulatory region 579761	193 bp proximal
Sema4a	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	within coordinates
Tssr932	transcription start site region 932	1719 bp downstream
Tssr29951	transcription start site region 29951	1792 bp upstream
Tssr34017	transcription start site region 34017	758 bp upstream
Tssr34018	transcription start site region 34018	229 bp downstream
Tssr34019	transcription start site region 34019	246 bp downstream
Tssr34020	transcription start site region 34020	260 bp downstream
Tssr34021	transcription start site region 34021	314 bp downstream
Tssr34022	transcription start site region 34022	1661 bp downstream
Tssr34023	transcription start site region 34023	1673 bp downstream
Tssr34024	transcription start site region 34024	1983 bp downstream