rs32887888 SNP Detail

Summary

• ID
  rs32887888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88361507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAACTACA TCCGTGAACA GAAGTAACTT ACTTCTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGGGT GGGTGGGTGT GTGGTATATG TGGCACTTCC
  Y
  CTGGGGCATT TCCTGGAACT AAAGGTGTCA GTAACCGAAC AGCCTCCTCA AGAAACCACC
  GAGGCTGGGT GAGCTGCTAG GATCCCTTCT GATGCCCAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743248	NES10752243	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32887888					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743248	NES10752243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88361507 () rs orientation: forward

Symbol	Name	Function Class
Rr367457	regulatory region 367457	649 bp downstream
Rr579760	regulatory region 579760	1676 bp distal
Rr579761	regulatory region 579761	within coordinates
Rr579762	regulatory region 579762	1487 bp proximal
Sema4a	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	within coordinates
Tssr932	transcription start site region 932	678 bp downstream
Tssr29951	transcription start site region 29951	751 bp upstream
Tssr34017	transcription start site region 34017	1799 bp upstream
Tssr34018	transcription start site region 34018	799 bp upstream
Tssr34019	transcription start site region 34019	788 bp upstream
Tssr34020	transcription start site region 34020	774 bp upstream
Tssr34021	transcription start site region 34021	721 bp upstream
Tssr34022	transcription start site region 34022	620 bp downstream
Tssr34023	transcription start site region 34023	632 bp downstream
Tssr34024	transcription start site region 34024	942 bp downstream
Tssr34025	transcription start site region 34025	973 bp downstream
Tssr34026	transcription start site region 34026	1102 bp downstream
Tssr34027	transcription start site region 34027	1130 bp downstream
Tssr34028	transcription start site region 34028	1492 bp downstream
Tssr34029	transcription start site region 34029	1526 bp downstream
Tssr34030	transcription start site region 34030	1535 bp downstream