rs32888384 SNP Detail

Summary

• ID
  rs32888384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88187586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTAGGT ACCAGGCTCA
  CATGTGGTAC ACATATATAT GTTCAGGCAA AGCATCCATC CACCTGAAAT AACTCTGAAA
  GAAAAAGAAA AAAGAAAGGT TTAGGTGGCA TGCACCTATT GTCTCTGCAC TTGGGAGGTG
  AAGGCGAGAG TTCAGGGGTC AAGGGTTCAG GGGTCAAGGG CGGCTTTAGT TACAGAACAA
  R
  TTCAAGGTGA GCCTGACCTA TGAGAGACTA TAAAAAAAGA CAATTTAAAA ATTTTTAAAT
  TTAATTTTCT TTTATGTCAT TTGGTGTTTT GCCTGCCTGC ATGCCTGTGT ACCACATGCA
  CACAAGGTGC CTGCAGAGTC TGGAAGAGGG CATTGGATCC CCTGGAACTG GAGTTAGATG
  GTTGTGAGCC ACCATCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46742396	NES10759238	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32888384					SNP	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742396	NES10759238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88187586 () rs orientation: forward

Symbol	Name	Function Class
Gm38392	predicted gene, 38392	within coordinates
Rr375311	regulatory region 375311	648 bp upstream
Rr579701	regulatory region 579701	916 bp proximal
Tssr931	transcription start site region 931	1758 bp upstream
Tssr29932	transcription start site region 29932	1820 bp downstream
Tssr33995	transcription start site region 33995	991 bp downstream