rs32888750 SNP Detail

Summary

• ID
  rs32888750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185994777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAATTC AATTTGTGAG
  TCATCTGACT AGCCAGTTGG CTTCTTTTAT CCCAAAGGGT CAGGTCCACA GAGTCACAGA
  TGTGCAGGAA ACCTTGGACT TGCTGTGAGC ATCCCTCAAA ATTTTTTTTA TCACACTCTC
  ACATTACATG CCTGCTCTAC TGCTGTGCAA CAACATATTA TGTGAACATC ATATAAACTA
  Y
  TTACTTGTAT GTGAAATATA TATACATATA TACATATATA TATATATATA TATACACACA
  CATATGTAGT GTCTGAAGTA GAAAAGAAAA GAAAGCAACT TTCAAAACTA TATGCTAATT
  ATGACAAAAC ATTTAACCTC ACAATTCTCT GGTATGTTTG AGAAAAGAAA TGATAAAATG
  AAACAACCAC TTGAACTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46743166	NES10644174	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32888750					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743166	NES10644174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185994777 () rs orientation: forward

Symbol	Name	Function Class
D1Mit361	DNA segment, Chr 1, Massachusetts Institute of Technology 361	581 bp distal
D1Mit361.3	DNA segment, Chr 1, Massachusetts Institute of Technology 361.3	453 bp distal
Rr372597	regulatory region 372597	375 bp downstream
Rr425468	regulatory region 425468	597 bp distal
Rr425469	regulatory region 425469	1407 bp proximal
Rr425470	regulatory region 425470	1961 bp proximal