rs32889613 SNP Detail

Summary

• ID
  rs32889613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGTTGGGA TTAACGATAT GTGACACCAC AACCACCATT
  ATTTATTTGT TTGTTTGTTC GTTTGTTTAT TATTTTTCGA GACAGGGTTT CTCTGTGTAA
  Y
  CCTGGCTGTT ATAACTCCCT TAGACCAGAC TGGCTTCGAA CTCAGAGACC TGCCTGTCTC
  TGCCTTTCAT GTGCCTCTAC CACCGGGCTA ATTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45708350	mCV22575307	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147526007	ENSMUSSNP1846572	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss321346963	CHEV_4_133900488	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32889613					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	785 bp distal
Rr601645	regulatory region 601645	854 bp distal
Rr601646	regulatory region 601646	234 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	1419 bp downstream
Tssr39549	transcription start site region 39549	1362 bp downstream
Tssr39550	transcription start site region 39550	1067 bp downstream
Tssr39551	transcription start site region 39551	1038 bp downstream
Tssr39552	transcription start site region 39552	965 bp downstream
Tssr39553	transcription start site region 39553	893 bp downstream
Tssr39554	transcription start site region 39554	869 bp downstream
Tssr39555	transcription start site region 39555	664 bp downstream
Tssr39556	transcription start site region 39556	549 bp downstream