rs32889683 SNP Detail

Summary

• ID
  rs32889683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185995304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATAATTG TAAATAGCTT
  GGACCTTAAA TATACTAAGC TATGGGAGAA ACTGACCTCC ATAAGAAAGA ATTACAAGTC
  TGATCATTCA TGTTCTTTCT CTAAGGGGCT GGAGTAGTTG GAGTTTATAT TGGAACAAGT
  TTTAGATTTT CTTCTCAAGT CAAATGGATA CACTGTTATT CTGTGATTTA AAATTTCTCC
  W
  AGGTAACTTA ATCCTCACTC AAGTGTAGTG TCATACTTGT GAAAGGTCAT AACTTCTATT
  GAGCATCAGA GCTGGATGTG GTGGCCACAG TGAGACTCTC CGTTCTCTTA TACTCGAAGC
  AGGAGGACTG TGAGCTCAGG TTCAGCCTGT GTTGCAAAAC AAAACAATGT CCCAAAAAAC
  AGAGCAAACA AAACAGCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743181	NES10644184	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32889683					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743181	NES10644184	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185995304 () rs orientation: forward

Symbol	Name	Function Class
D1Mit361	DNA segment, Chr 1, Massachusetts Institute of Technology 361	1108 bp distal
D1Mit361.3	DNA segment, Chr 1, Massachusetts Institute of Technology 361.3	980 bp distal
Rr372597	regulatory region 372597	902 bp downstream
Rr425468	regulatory region 425468	1124 bp distal
Rr425469	regulatory region 425469	880 bp proximal
Rr425470	regulatory region 425470	1434 bp proximal