GTTTCCAGCA TGTGAGGAGG AGGCCACTGC AGATGTGCCA AGGCTTTGGC AGAGTGTGTT AAAGTCCTCA GACCACCTGA CCTCTAGCCC AGATGGCATT Y ACAATGTAGT CAGCTGTACT GGCTGCTCCT CAGGCCAGCT GGAGAAGGAC AGGACTGGAG TCACCCCATG CTGCCTATTA GGGAGGGACT GTCTCTGGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
---|---|---|---|---|---|---|---|---|---|---|
ss45208613 | mCV25096179 | ABI | CRAMUS_MOUSE | f | SNP | T | T | C | T | C |
ss146386111 | ENSMUSSNP4377983 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | C | ||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
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rs32889729 | SNP | T | T | C | T | C |
Location: Chr2:26499380 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm20532 | predicted gene 20532 | within coordinates | ||||||
Gm39772 | predicted gene, 39772 | 161 bp upstream | ||||||
Gm57466 | predicted gene, 57466 | 223 bp upstream | ||||||
Rr42176 | regulatory region 42176 | 1980 bp distal | ||||||
Rr48585 | regulatory region 48585 | within coordinates | ||||||
Rr372944 | regulatory region 372944 | 891 bp upstream | ||||||
Tssr16813 | transcription start site region 16813 | 394 bp upstream | ||||||
Tssr16814 | transcription start site region 16814 | 433 bp upstream | ||||||
Tssr16815 | transcription start site region 16815 | 1320 bp upstream | ||||||
Tssr23142 | transcription start site region 23142 | 1543 bp upstream | ||||||
Tssr23143 | transcription start site region 23143 | 1367 bp upstream | ||||||
Tssr23144 | transcription start site region 23144 | 1295 bp upstream | ||||||
Tssr23145 | transcription start site region 23145 | 1205 bp upstream | ||||||
Tssr23146 | transcription start site region 23146 | 1175 bp upstream | ||||||
Tssr23147 | transcription start site region 23147 | 1107 bp upstream | ||||||
Tssr23148 | transcription start site region 23148 | 734 bp upstream | ||||||
Tssr23149 | transcription start site region 23149 | 693 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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