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rs32889729 SNP Detail
Summary
  • ID
    rs32889729
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:26499380 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GTTTCCAGCA TGTGAGGAGG AGGCCACTGC AGATGTGCCA
    AGGCTTTGGC AGAGTGTGTT AAAGTCCTCA GACCACCTGA CCTCTAGCCC AGATGGCATT
    Y
    ACAATGTAGT CAGCTGTACT GGCTGCTCCT CAGGCCAGCT GGAGAAGGAC AGGACTGGAG
    TCACCCCATG CTGCCTATTA GGGAGGGACT GTCTCTGGC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45208613 mCV25096179 ABI CRAMUS_MOUSE f SNP T T C T C
ss146386111 ENSMUSSNP4377983 ENSEMBL ENSEMBL_Sanger f SNP T C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs32889729 SNP T T C T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:26499380 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm20532 predicted gene 20532 within coordinates
Gm39772 predicted gene, 39772 161 bp upstream
Gm57466 predicted gene, 57466 223 bp upstream
Rr42176 regulatory region 42176 1980 bp distal
Rr48585 regulatory region 48585 within coordinates
Rr372944 regulatory region 372944 891 bp upstream
Tssr16813 transcription start site region 16813 394 bp upstream
Tssr16814 transcription start site region 16814 433 bp upstream
Tssr16815 transcription start site region 16815 1320 bp upstream
Tssr23142 transcription start site region 23142 1543 bp upstream
Tssr23143 transcription start site region 23143 1367 bp upstream
Tssr23144 transcription start site region 23144 1295 bp upstream
Tssr23145 transcription start site region 23145 1205 bp upstream
Tssr23146 transcription start site region 23146 1175 bp upstream
Tssr23147 transcription start site region 23147 1107 bp upstream
Tssr23148 transcription start site region 23148 734 bp upstream
Tssr23149 transcription start site region 23149 693 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory