rs32890501 SNP Detail

Summary

• ID
  rs32890501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185995476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTATTCT GTGATTTAAA
  ATTTCTCCAA GGTAACTTAA TCCTCACTCA AGTGTAGTGT CATACTTGTG AAAGGTCATA
  ACTTCTATTG AGCATCAGAG CTGGATGTGG TGGCCACAGT GAGACTCTCC GTTCTCTTAT
  ACTCGAAGCA GGAGGACTGT GAGCTCAGGT TCAGCCTGTG TTGCAAAACA AAACAATGTC
  Y
  CAAAAAACAG AGCAAACAAA ACAGCAGCAG CAACAGCAAC AGGAATTGTG TTGGGGAAGA
  AGAGATCAGA CCATTGCATA ACTTGTGCAC TTTGTCCCAA GAAACTTCCT TTTCACTCTT
  AACTTCTGAG TTTCTTCACA TGTAAAATGG ATATTGTGGC TGAAAAGATG GCTCAGTTGC
  CACACAAACC TAAGGACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743190	NES10644191	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32890501					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743190	NES10644191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185995476 () rs orientation: forward

Symbol	Name	Function Class
D1Mit361	DNA segment, Chr 1, Massachusetts Institute of Technology 361	1280 bp distal
D1Mit361.3	DNA segment, Chr 1, Massachusetts Institute of Technology 361.3	1152 bp distal
Rr372597	regulatory region 372597	1074 bp downstream
Rr425468	regulatory region 425468	1296 bp distal
Rr425469	regulatory region 425469	708 bp proximal
Rr425470	regulatory region 425470	1262 bp proximal