rs32892125 SNP Detail

Summary

• ID
  rs32892125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88499265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTTGG AGCTTGCATC
  CTCATCCAGA TTGTTCAATG TGGATTTCCA CGGCCTCCTC CCCACTGAGA GGGCACAAGC
  ATCTCTCCTG TATTCTTAGG GAAAAGCAAA CCACTGTCCC TCTCACATTT GGTTGGAGTA
  GGGAAGGATG CATCGTTCCT TCTGGATGCC TCCCCCTTAC CCACAGCAAG GACCTCAGAG
  Y
  AAAGGCTAGC TGATCAGAAG ACAACTAATT TGTTTGCTTT ATTCAATAGG TCACAATCGC
  TTCTCGGCCT TTTGGCTAAG ATCAAGTGTA GTATTCAATA GGTCACAAAG GACAATGTAA
  ATGGGCTTAT CCAAAGATCA CCAGCAGATG GCAGTCTAGC ATATTTATTT TTACTTAGTG
  TTTTTGAGAC AAGTCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743923	NES10747429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32892125					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743923	NES10747429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88499265 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	56 bp upstream
Rr397772	regulatory region 397772	within coordinates
Rr397773	regulatory region 397773	1381 bp upstream
Rr579834	regulatory region 579834	406 bp distal
Rr579835	regulatory region 579835	137 bp proximal
Tssr29977	transcription start site region 29977	1132 bp upstream
Tssr29978	transcription start site region 29978	1160 bp upstream
Tssr29979	transcription start site region 29979	1211 bp upstream