rs32892128 SNP Detail

Summary

• ID
  rs32892128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88499381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCTCAC ATTTGGTTGG
  AGTAGGGAAG GATGCATCGT TCCTTCTGGA TGCCTCCCCC TTACCCACAG CAAGGACCTC
  AGAGCAAAGG CTAGCTGATC AGAAGACAAC TAATTTGTTT GCTTTATTCA ATAGGTCACA
  ATCGCTTCTC GGCCTTTTGG CTAAGATCAA GTGTAGTATT CAATAGGTCA CAAAGGACAA
  Y
  GTAAATGGGC TTATCCAAAG ATCACCAGCA GATGGCAGTC TAGCATATTT ATTTTTACTT
  AGTGTTTTTG AGACAAGTCT CAAAACTTGT CTCTCTATAG ATAAGACTAG TCTGAACTCA
  CTAGATACCC CAAGTCTGGC TTGTCCCAGA GTGCTATGTG CCACCACACT GACCCACATC
  ATACTTAATA AGTGACTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743926	NES10747430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32892128					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743926	NES10747430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88499381 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	within coordinates
Rr397772	regulatory region 397772	within coordinates
Rr397773	regulatory region 397773	1265 bp upstream
Rr579834	regulatory region 579834	522 bp distal
Rr579835	regulatory region 579835	21 bp proximal
Tssr29977	transcription start site region 29977	1016 bp upstream
Tssr29978	transcription start site region 29978	1044 bp upstream
Tssr29979	transcription start site region 29979	1095 bp upstream