rs32892916 SNP Detail

Summary

• ID
  rs32892916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88501094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTGAGTA CAAAGTATAA AGAATTTAGA TGACTAACCT
  ATGTCAATTA AGATGTAAGT TGTAGGACTA GGTTTCAAAG TCAAGTTCAT TTGGCATCCA
  R
  CTCTGTCGCG TTGTCATTAA GAACAAAAGC AAAACAAAAA CCCCACTATC ATTTTTATCC
  TACGGTGTTG GGACTGGAAC CCAGCACCTC TATGAGACTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743935	NES10747433	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32892916					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743935	NES10747433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88501094 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	1597 bp downstream
Rr397772	regulatory region 397772	1531 bp downstream
Rr397773	regulatory region 397773	147 bp downstream
Rr579835	regulatory region 579835	1671 bp distal
Tssr29977	transcription start site region 29977	674 bp downstream
Tssr29978	transcription start site region 29978	645 bp downstream
Tssr29979	transcription start site region 29979	600 bp downstream
Tssr29980	transcription start site region 29980	306 bp upstream