rs32892918 SNP Detail

Summary

• ID
  rs32892918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88501103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACGTAT GTATCAAATG
  TTGATGAATT ATTTTCATGT TTTCTTTTTT TTAATCTTTA GAATCTTATA GGGTTAATAT
  ACTCAACCCT TGTCTTGAGT ACAAAGTATA AAGAATTTAG ATGACTAACC TATGTCAATT
  AAGATGTAAG TTGTAGGACT AGGTTTCAAA GTCAAGTTCA TTTGGCATCC AACTCTGTCG
  Y
  GTTGTCATTA AGAACAAAAG CAAAACAAAA ACCCCACTAT CATTTTTATC CTACGGTGTT
  GGGACTGGAA CCCAGCACCT CTATGAGACT CAAAACAATC TCAGGACCAA TCATTTGTTC
  CTAAAGCCAA GCTCTTCCAG AGTCTAGACT GTCCCACTGT CCTATTAGGG TTTATCCACC
  CTACCAGCTA CTTTAGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743938	NES10747434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32892918					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743938	NES10747434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88501103 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	1606 bp downstream
Rr397772	regulatory region 397772	1540 bp downstream
Rr397773	regulatory region 397773	156 bp downstream
Rr579835	regulatory region 579835	1680 bp distal
Tssr29977	transcription start site region 29977	683 bp downstream
Tssr29978	transcription start site region 29978	654 bp downstream
Tssr29979	transcription start site region 29979	609 bp downstream
Tssr29980	transcription start site region 29980	297 bp upstream