rs32892920 SNP Detail

Summary

• ID
  rs32892920
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88501601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGATAC TACAGTGCCT
  GCTGAGAACC TGGTGGGGAG ACGAGGATTG GCTGCGTTTG ACAGGTCTTT GCTTTCTTAT
  CCTACGTTTT GCTTCCTGGA CTAGGACCCA GGGCTCCTGT AGAGAAGCAT ATAGTCACAA
  GCCCAGGGGT GGGGTATGGT GGGGAGGAAG GCAGAATCCT TAAATTCAAA CAAACAAAGC
  S
  GAGGCTCACC TTTGGAAACA GCAAAATTCC AGACTGGTGC ATGAGCCTCG AGTGCCACAG
  AGGAGAGGGG CGGGGTGGTG TTGAGATGCC TGCCTGGTGA CTTAGCCGAG TGTGTGGTTG
  GATTAGGGTC TGGGGATGCT TGGCTACCTT CCCAGCTTGG AACTTCTGGA ATTTCCTAAC
  AGTAAAGGCA ATAACTGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46743941	NES10747436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32892920					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743941	NES10747436	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88501601 () rs orientation: forward

Symbol	Name	Function Class
Rr397773	regulatory region 397773	654 bp downstream
Tssr29977	transcription start site region 29977	1181 bp downstream
Tssr29978	transcription start site region 29978	1152 bp downstream
Tssr29979	transcription start site region 29979	1107 bp downstream
Tssr29980	transcription start site region 29980	187 bp downstream