rs32894147 SNP Detail

Summary

• ID
  rs32894147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144109930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTTGTCTA TACTGTTAAT GGAAGTATCT ATTGAGAAAC
  AGCAGCAGCT AAATTTATAA ATGTCTGTCA CTAAATCTAA ATAAATATCC TTCACTAAAT
  Y
  CATGTAACCC CCTAGTGAAA GTTATTTTAA GTCATATTAC TATAGTCACT GAGGACTGAA
  TTCAGGGTCT GGCTCACGTT AGACAAACAA GCCATCCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45209106	mCV22515779	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147789024	ENSMUSSNP6481125	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs32894147					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144109930 () rs orientation: forward

Symbol	Name	Function Class
Rr566422	regulatory region 566422	1609 bp distal
Rr566423	regulatory region 566423	within coordinates
Rr566424	regulatory region 566424	940 bp proximal
Rr566425	regulatory region 566425	1804 bp proximal
Snord17	small nucleolar RNA, C/D box 17	1808 bp upstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	1915 bp downstream
Tssr26593	transcription start site region 26593	1792 bp upstream